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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
29/05/2019 |
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Actualizado : |
11/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
MONTEVERDE, E.; GUTIERREZ, L.; BLANCO, P.H.; PÉREZ DE VIDA, F.; ROSAS, J.E.; BONNECARRERE, V.; QUERO, G.; MCCOUCH, SUSAN |
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Afiliación : |
ELIANA MONTEVERDE, Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University.; LUCÍA GUTIERREZ, Department of Agronomy, University of Wisconsin.; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARIA VICTORIA BONNECARRERE MARTINEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GASTÓN QUERO CORRALLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University. |
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Título : |
Integrating molecular markers and environmental covariates to interpret genotype by environment interaction in rice (Oryza sativa L.) grown in subtropical areas. |
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Fecha de publicación : |
2019 |
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Fuente / Imprenta : |
G3: GENES, GENOMES, GENETICS May 1, 2019, v.9 (5), p. 1519-1531. OPEN ACCESS. |
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DOI : |
10.1534/g3.119.400064 |
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Idioma : |
Inglés |
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Notas : |
Article history: Manuscript received February 6, 2019 // Accepted for publication March 5, 2019// Published Early Online March 15, 2019.
Supplemental material available at Figshare: https://doi.org/10.25387/g3.7685636 |
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Contenido : |
Understanding the genetic and environmental basis of genotype · environment interaction (G·E) is of fundamental importance in plant breeding. If we consider G·E in the context of genotype · year interactions (G·Y), predicting which lines will have stable and superior performance across years is an important challenge for breeders. A better understanding of the factors that contribute to the overall grain yield and quality of rice (Oryza sativa L.) will lay the foundation for developing new breeding and selection strategies for combining high quality, with high yield. In this study, we used molecular marker data and environmental covariates (EC) simultaneously to predict rice yield, milling quality traits and plant height in untested environments (years), using both reaction norm models and partial least squares (PLS), in two rice breeding populations (indica and tropical japonica). We also sought to explain G·E by differential quantitative trait loci (QTL) expression in relation to EC. Our results showed that PLS models trained with both molecular markers and EC gave better prediction accuracies than reaction norm models when predicting future years. We also detected milling quality QTL that showed a differential expression conditional on humidity and solar radiation, providing insight for the main environmental factors affecting milling quality in subtropical and temperate rice growing areas. |
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Palabras claves : |
ENVIRONMENTAL COVARIATES; GENOMIC PREDICTIONS; GENOTYPE BY ENVIRONMENT INTERACTION; QTL BY ENVIRONMENT INTERACTION. |
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Thesagro : |
ARROZ; FITOMEJORAMIENTO; RICE. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/12705/1/Blanco-Genes-Genomes-Genetics-2019.pdf
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Marc : |
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100 1 $aMONTEVERDE, E.
245 $aIntegrating molecular markers and environmental covariates to interpret genotype by environment interaction in rice (Oryza sativa L.) grown in subtropical areas.$h[electronic resource]
260 $c2019
500 $aArticle history: Manuscript received February 6, 2019 // Accepted for publication March 5, 2019// Published Early Online March 15, 2019. Supplemental material available at Figshare: https://doi.org/10.25387/g3.7685636
520 $aUnderstanding the genetic and environmental basis of genotype · environment interaction (G·E) is of fundamental importance in plant breeding. If we consider G·E in the context of genotype · year interactions (G·Y), predicting which lines will have stable and superior performance across years is an important challenge for breeders. A better understanding of the factors that contribute to the overall grain yield and quality of rice (Oryza sativa L.) will lay the foundation for developing new breeding and selection strategies for combining high quality, with high yield. In this study, we used molecular marker data and environmental covariates (EC) simultaneously to predict rice yield, milling quality traits and plant height in untested environments (years), using both reaction norm models and partial least squares (PLS), in two rice breeding populations (indica and tropical japonica). We also sought to explain G·E by differential quantitative trait loci (QTL) expression in relation to EC. Our results showed that PLS models trained with both molecular markers and EC gave better prediction accuracies than reaction norm models when predicting future years. We also detected milling quality QTL that showed a differential expression conditional on humidity and solar radiation, providing insight for the main environmental factors affecting milling quality in subtropical and temperate rice growing areas.
650 $aARROZ
650 $aFITOMEJORAMIENTO
650 $aRICE
653 $aENVIRONMENTAL COVARIATES
653 $aGENOMIC PREDICTIONS
653 $aGENOTYPE BY ENVIRONMENT INTERACTION
653 $aQTL BY ENVIRONMENT INTERACTION
700 1 $aGUTIERREZ, L.
700 1 $aBLANCO, P.H.
700 1 $aPÉREZ DE VIDA, F.
700 1 $aROSAS, J.E.
700 1 $aBONNECARRERE, V.
700 1 $aQUERO, G.
700 1 $aMCCOUCH, SUSAN
773 $tG3: GENES, GENOMES, GENETICS May 1, 2019$gv.9 (5), p. 1519-1531. OPEN ACCESS.
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Registro original : |
INIA Treinta y Tres (TT) |
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| Registros recuperados : 14 | |
| 3. |  | MONTEVERDE, E.; SCHEFFEL, S.; REBOLLO, I.; MOLINA, F.; PÉREZ DE VIDA, F.; ROSAS, J.E. Ganancia genética del Programa de Mejoramiento Genético de Arroz de INIA. In: Terra, J. A.; Martínez, S.; Saravia, H.; Mesones, B. (Eds.) Arroz 2021. Montevideo (UY): INIA, 2022. p. 68-70. (INIA Serie Técnica; 262)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 4. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; MCCOUCH, S.; GERMAN, S.; JANNINK, J.; GUTIÉRREZ, L. Resistencia múltiple a enfermedades tropicales y templadas del tallo y la vaina del arroz. In: UNIVERSIDAD DE LA REPÚBLICA (UDELAR). FACULTAD DE AGRONOMÍA. Resúmenes. Jornadas de Investigación, 8-9 nov., 2018, Montevideo, Uruguay. Montevideo; FAGRO, 2019. p. 19 Trabajo originalmente publicado en: Rosas, J.E.; Martínez, S.; Blanco, P.; Pérez de Vida, F.; Bonnecarrère, V.; Mosquera, G.; Cruz, M. Garaycochea, S.; Monteverde, E.; McCouch, S.; Germán, S.; Jannink, J.L.; Gutiérrez, L. 2018....| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 5. | | MONTEVERDE, E.; GUTIERREZ, L.; BLANCO, P.H.; PÉREZ DE VIDA, F.; ROSAS, J.E.; BONNECARRERE, V.; QUERO, G.; MCCOUCH, SUSAN Integrating molecular markers and environmental covariates to interpret genotype by environment interaction in rice (Oryza sativa L.) grown in subtropical areas. G3: GENES, GENOMES, GENETICS May 1, 2019, v.9 (5), p. 1519-1531. OPEN ACCESS. Article history: Manuscript received February 6, 2019 // Accepted for publication March 5, 2019// Published Early Online March 15, 2019.
Supplemental material available at Figshare: https://doi.org/10.25387/g3.7685636| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 6. | | MONTEVERDE, E.; ROSAS, J.E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; QUERO, G.; GUTIERREZ, L.; MCCOUCH, S. Multienvironment models increase prediction accuracy of complex traits in advanced breeding lines of rice (O. sativa). Crop Science, 2018, 58:1519-1530. Article history: Accepted on May 09, 2018. Published online June 21, 2018.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 7. | | BONNECARRERE, V.; QUERO, G.; MONTEVERDE, E.; ROSAS, J.E.; PÉREZ DE VIDA, F.; CRUZ, M.; CORREDOR, E.; GARAYCOCHEA, S.; MONZA, J.; BORSANI, O. Candidate gene markers associated with cold tolerance in vegetative stage of rice (Oryza sativa L.). Euphytica, 2015, v. 203 no. 2, p. 385-398. p. 385-398. Received: 17 June 2014 / Accepted: 23 October 2014 / Published online: 2 November 2014| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
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| 8. | | QUERO, G.; GUTIÉRREZ, L.; FERNANDEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; GARAYCOCHEA, S.; MONTEVERDE, E.; MCCOUCH, M.; ROSAS, J.E.; BERBERIAN, N.; SIMONDIS, S.; BONNECARRERE, V. Genome wide association (GWAS) discovers rice granin quality genes in the starch metabolism, grain size and cell wall synthesis pathways. MV 24 - COMUNICACIONES LIBRES - MV. MEJORAMIENTO VEGETAL In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016. p. 292| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | MONTEVERDE, E.; BLANCO, P.H.; BONNECARRERE, V.; GUTIÉRREZ, L.; ROSAS, J.E.; QUERO, G.; BARBERIÁN, N.; GARAYCOCHEA, S.; FERNANDEZ, S.; MCCOUCH, S. Implementing Genomic Selection in a temperate Rice Breeding Program. [P0716] In: International Plant & Animal Genome, Conference PAG XXIV, "The largest Ag-genomics Meeting in the World San Diego, CA, USA; January 9-13, 2016. [Abstract]| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
|  |
| 10. | | Galván, G.Colnago, P.Noguez, M.Peluffo, S.González Idiarte, H.Cortizas, J.M.Malutín, L.Musso, D.González Ravelino, P.Monteverde, E.Speranza, P. Mejoramiento por resistencia a enfermedades en cebolla (Proyecto INIA-FPTA) Las Brujas, Canelones (Uruguay): INIA, 2009. p. 1 (INIA Serie Actividades de Difusión ; 564) INIA Las Brujas| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 11. | | SPINDEL, J.E.; MONTEVERDE, E.; BEGUM, H.; AKDEMIR, D.; COLLARD, B.; REDOÑA, E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; GUTIÉRREZ, L.; ROSAS, J.E.; QUERO, G.; BERBERIÁN, N.; GARAYCOCHEA, S.; FERNANDEZ, S.; JANNINK, J.L.; MCCOUCH, S. GS + de novo GWAS in Tropical and Temperate Irrigated Rice Breeding Programs. [W809] In: International Plant & Animal Genome, Conference PAG XXIV, "The largest Ag-genomics Meeting in the World San Diego, CA, USA; January 9-13, 2016. [Abstract] .| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 12. | | QUERO, G.; GUTIÉRREZ, L.; MONTEVERDE, E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; ROSAS, J.E.; FERNANDEZ, S.; GARAYCOCHEA, S.; MC COUCH, S.; BERBERIAN, N.; SIMONDI, S.; BONNECARRERE, V. Genome-wide association study using historical breeding populations discovers genomic regions involved in high-quality rice. Plant Genome, 2018, Volume 11, Article number 170076. Open Access. Article history: Received: Aug 25, 2017 // Accepted: Apr 09, 2018 // Published: July 12, 2018.
Permissions: This is an open access article under the CC BY-NC-ND license. Proper attribution is required for reuse. No permissions are needed...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
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| 13. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; GARAYCOCHEA, S.; FERNANDEZ, S.; IRIARTE, W.; MONTEVERDE, E.; BERBERIÁN, N.; BONNECARRERE, V.; GUTIERREZ, L.; MCCOUCH, S.; JANNINK, J.L. Mapeo asociativo de resistencia a enfermedades del tallo y la vaina en arroz.[Poster]. In: Jornadas de Agrobiotecnologìa, (9a., 2015, Montevideo)| Biblioteca(s): INIA Treinta y Tres. |
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| 14. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; GERMAN, S.; MCCOUCH, S.; JANNINK, J.; GUTIÉRREZ, L. Resistance to multiple temperate and tropical stem and sheath diseases of rice. The Plant Genome, 2018, v. 11, no. 1. art. 170029. OPEN ACCESS. Doi: https://doi.org/10.3835/plantgenome2017.03.0029 p. 1-13. History paper: Received 29 Mar. 2017, Accepted 19 Sep. 2017. Publihed online December 14, 2017.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 14 | |
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